Steffen Klaere
I moved to the Computational Evolution Group at the University of Auckland.
Research Interests:
- Molecular Evolution
- Algebraic und Statistical Models in Phylogeny
- Phylogenetic Diversity and Phylogeography
- Greedy algorithm and greedoids
- Tree distance measures
Short Vita:
Education:
Degrees:
Professional Experience:
- 2005-present: Postdoc at the
Center for Integrative Bioinformatics Vienna (CIBIV),
Max F. Perutz Laboratories (MFPL), Vienna, Austria
- 2005: Postdoc at the
Institute of Bioinformatics, University of Düsseldorf, Germany
- 2004-2005: Staff scientist at the
Department of Statistics
Ludwig-Maximilian-Universität, Munich, Germany
- 2004: Staff scientist at the
Department of Mathematics
Technische Universität, Munich, Germany
- 2001-2004: Staff scientist at the
Institute of Biomathematics and Biometry,
Research Center for Environment and Health, Neuherberg, Germany
Research Grants:
- 2007: One month stay at the Programme "Phylogenetics" at the
Isaac Newton Institute, Cambridge, UK
- 2003: Three month Marie-Curie grant for Programme "Mathematique, Informatique et
Genomique" at the Institut Henri
Poincare, Paris, France.
Publications / Conference Contributions
Paper
- S. Klaere, T. Gesell, and A. von Haeseler (2008)
The impact of single substitutions on multiple sequence alignments. Proc. Royal Soc.
Lond. B, 363(1512), (abstract)
- A. Kupczok, A. von Haeseler, and S. Klaere (2008)
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
J. Comput. Biol., 15(6), (abstract)
- B.Q. Minh, F. Pardi, S. Klaere, and A. von Haeseler (2008)
Budgeted Phylogenetic Diversity on Circular Split Systems.
IEEE/ACM Trans. Comput. Biol. Bioinform., 5, in press.
(DOI: 10.1109/TCBB.2008.54)
- B.Q. Minh, S. Klaere, and A. von Haeseler (2007), Phylogenetic
Diversity on Split Systems, Preprint Series of the Isaac Newton Institute,
(pdf)
- B.Q. Minh, S. Klaere, and A. von Haeseler (2006), Phylogenetic
Diversity within Seconds, Syst. Biol. 55(5), 769-773, (doi)
Talks
- Phylogenetic Diversity and Incongruent Trees,
Invited Talk, Institute
for Computational Science, ETH Zürich, SUI, May 15, 2008.
- Pruning Galled Trees,
Invited Talk, School of Computing Sciences,
University of East Anglia, Norwich, UK, May 2, 2008.
- Lost in Tree Space,
Phylogenetics Programme 2007,
Cambridge, UK, October 29, 2007.
- Some Thoughts on Phylogenetic Diversity,
Phylogenetics Programme
2007, Cambridge, UK, October 15, 2007.
- Phylogenetic Diversity on Split Networks,
Evolution 2007,
Christchurch, NZ, June 16-20, 2007.
- Phylogenetic Diversity on Split Systems,
Phylogroup meeting,
Hinxton, GB, January 12, 2007.
- Phylogenetische Invarianten: Aufgabenstellungen und Probleme,
Invited
Talk, Department of Mathematics, RWTH Aachen, D, September 8, 2005.
- Markov Models on Triple Trees,
Phylogenetic Trees and Networks II,
Greifswald, D, September 21-25, 2003.
- Über eine Klasse stochastischer Differentialgleichungen ohne
Adaptiertheitsforderung,
Studierendenkonferenz Mathematik, Aachen,
D, September 12-14, 2001
- On a Class of Linear Stochastic Differential Equations without Adaptedness,
QP Conference, Burg, D, March, 15-20, 2001.
Conference Posters
- Il Buono, Il Brutto, Il Cattivo,
presented at Phyloinformatics workshop, October 22-24, 2007, Edinburgh, UK.
- Phylogenetic Diversity on Split Systems,
presented at MASAMB 2007 March 29-30, 2007, Manchester, UK.
- Stochastic Models of Molecular Evolution:
An Algebraic Analysis,
presented at Conference on the Mathematics of Evolution and Phylogeny (MEP 2005),
June 17-21, 2005, Paris, France.
Teaching
Lectures
- Spezielle Statistik in der Biotechnologie, WiSe 2007/2008, Veterinary University Vienna
- Spezielle Bioinformatik in der Biotechnologie, WiSe 2007/2008, Veterinary University Vienna
- Spezielle Statistik in der Biotechnologie, WiSe 2006/2007, Veterinary University Vienna
Tutorials
- Informatik 2, SoSe 2005, Heinrich-Heine-Universität Düsseldorf, Prof. Dr. Arndt von Haeseler
- Zeitreihenanalyse, SoSe 2004, Technical University Munich, Prof. Dr. Rupert Lasser
- Maßtheorie, WiSe 2002/2003, Technical University Munich, Prof. Dr. Rolf Wim Henrichs
- Stochastik für Wirtschaftsmathematiker, SoSe 2000, Friedrich-Schiller-Universität Jena,
Prof. Dr. Karl-Heinz Fichtner
- Stochastik für Wirtschaftsmathematiker, SoSe 1999, Friedrich-Schiller-Universität Jena,
Prof. Dr. Karl-Heinz Fichtner
- Informatik 1 Praktikum, WiSe 1998/1999, Friedrich-Schiller-Universität Jena, Prof. Dr. Klaus Küspert
Addresses
Steffen Kläre
Center for Integrative Bioinformatics Vienna (CIBIV)
(CIBIV is a joint institute of Vienna University,
Medical University, and
University of Veterinary Medicine, Vienna, Austia)
Max F. Perutz Laboratories (MFPL)
Dr. Bohr Gasse 3 / 6.15
A-1030 Wien, Austria
Phone: ++43 1 / 79044 - 4586
Fax: ++43 1 / 79044 - 4551
Email: steffen.klaere(AT)univie.ac.at
Postal Address:
Center for Integrative Bioinformatics Vienna (CIBIV)
Max F. Perutz Laboratories (MFPL)
Dr. Bohr Gasse 9
A-1030 Wien, Austria
S. Klaere - Last Change:
22.May.2009
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