Olga Chernomor

Research Interests:

• Phylogenomics and Maximum Likelihood inference
• Phylogenetic diversity and its application in Conservation Prioritization
• Computational Biophysics and Chemistry

Education:

• 2011-2015: Ph.D. in Bioinformatics, Vienna Graduate School in Computational Science, CIBIV, University of Vienna (Austria)
  Thesis: "Phylogenomics: theory, algorithms and applications"
• 2009-2011: M.Sc. in Mathematical Engineering, University of L'Aquila (Italy) / University of Nice - Sophia Antipolis (France)
• 2008-2009: M.Sc. in Mathematics, Oles Honchar Dnipropetrovsk National University (Ukraine)
• 2004-2008: B.Sc. in Mathematics and basics of Economics, Oles Honchar Dnipropetrovsk National University (Ukraine)

Professional Experience:

• 01/2016-ongoing: Scientific Assistant, Center for Integrative Bioinformatics Vienna (CIBIV), University of Vienna
• WS 2012,WS 2013: Tutor, Introduction to bioinformatics, University of Vienna
• 10/2011-12/2015: Scientific Assistant, Center for Integrative Bioinformatics Vienna (CIBIV), Max F. Perutz Laboratories (MFPL), University of Vienna
• 04/2011-07/2011: Collaboration with group of Computational Biophysics, Biochemistry and Chemistry (CBBC), La Sapienza-University of Rome

Publications

• O. Chernomor, A. von Haeseler, and B.Q. Minh. (2016) Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices. Systematic Biology (DOI:10.1093/sysbio/syw037)

• O. Chernomor, S. Klaere, A. von Haeseler, and B.Q. Minh (2016) Split diversity: measuring and optimizing biodiversity using phylogenetic split networks. In R. Pellens and P. Grandcolas (eds.) Biodiversity Conservation and Phylogenetic Systematics (Series: Topics in Biodiversity and Conservation), Springer, Heidelberg/New York. (ISBN: 978-3-319-22460-2)

• O. Chernomor, B.Q. Minh, and A. von Haeseler (2015) Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference. Journal of Computational Biology, Dec; 22(12):1129-42. (DOI:10.1089/cmb.2015.0146)
• O. Chernomor, B.Q. Minh, F. Forest, S. Klaere, T. Ingram, M. Henzinger, and A. von Haeseler (2015) Split Diversity in Constrained Conservation Prioritization using Integer Linear Programming. Methods in Ecology and Evolution, 6, 83-91. (DOI:10.1111/2041-210X.12299)

• E. Coccia, O. Chernomor, M. Barborini, S. Sorella, and L. Guidoni. (2012) Molecular Electrical Properties from Quantum Monte Carlo Calculations: Application to Ethyne. Journal of Chemical Theory and Computation, 8(6), pp 1952-1962. (DOI:10.1021/ct300171q) )

Software contributions

1. IQ-TREE - http://www.cibiv.at/software/iqtree/about/
2. PDA - http://www.cibiv.at/software/pda/

Addresses

Postal Address:

Olga Chernomor - Last Change: .