Welcome to NextGen* - The Workbench for your Next Generation Sequencing analysis

Introduction:

NG* was designed to help Biologists and Bioinformatition investigating their Next Generation Sequencing Data. Given NG* you can not just analyze your existing data set, furthermore it helps to design your pipeline.

• NextGenMap (NGM) Refrence based mapping program.
• NextGenView (NGV) Viewer for Next Generation Sequencing.
• NextGenBench (NGB) Benchmarksystem for next generation sequencing mapper and assembler.
• Bisulfite Sequencing Scorer (BiSS) Whole-genome bisulfite deep sequencing mapping and downstream analysis pipeline.
• Mason C++ alignment library package for next generation sequencing.
• Defense Method to detect and reduce contamination in NGS data

Availability:

Requirements:

• Some programs require a CUDA able graphics card (here is the list of all usable graphic cards CUDA Cards
• A Linux operating system
• A PC with at least 2 GB of memory

Latest Version NextGen* 0.0.1 (14^th December 2010):

• Please read the User Manual carefully before using NextGen* the first time or when you upgrade the new version!!

Download:

• Source package for Linux are available in gzipped TAR format. The current version of NextGen* is just tested and released under Linux. Further versions will also be available under Windows and Macs.

Reference:

Note:

• Please, let us know if you download this program by sending an email to {fritz.sedlazeck,arndt.von.haeseler}@univie.ac.at