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Welcome to NGSE - The Next Generation Sequencing Evaluation System
Introduction:
Next Generation Sequencing Evaluation (NGSE) is
designed to evaluate the performance of different mapping
programs on the basis of the simulated read set created by Next Generation Sequencing Simulation (NGSS).
NGSE currently supports following mapping programs:
.
- BlastN
- Bowtie
- BWA (and all assemblers producing SAM format output (including the MD:Z field (See SAM-format specification)))
- NextGenMap
- Shrimp
- SSaha
Next Generation
Sequencing Simulation (NGSS).
This program simulates the datasets on which the progams operate.
NGSS and NGSE are part of the Next Generation Sequencing Benchmark System (NGB).
NGSE is part of the NG* workbench.
Availability:
Requirements:
- A
PC with at least 4 GB of memory and the latest java runtime version
Latest Version NGSE 0.0.1 (14th December 2010):
- Please
read the User Manual carefully before
using NGSE the first time or when you upgrade the new
version!!
Download:
- Source
package for Linux are available in gzipped TAR format. The current
version of NGSE is just tested and released under Linux.
Further versions will also be available under Windows and Macs.
Reference:
The method is described in details in the following
articles:
Note:
- Please, let us know if you download this program by sending an email to {fritz.sedlazeck,arndt.von.haeseler}@univie.ac.at
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