Package weblogolib :: Module colorscheme

Module colorscheme

Popular color codings for nucleic and amino acids. 

Classes:
    ColorScheme -- A color scheme
    ColorGroup  
    
    
Generic
    monochrome

Nucleotides
    nucleotide
    base pairing

Amino Acid
    hydrophobicity
    chemistry
    charge
    taylor

Status : Beta - Needs documentation.

Classes
	ColorScheme A coloring of an alphabet.
	ColorGroup Associate a group of symbols with a color

Variables
	monochrome = `ColorScheme([])`
	nucleotide = `ColorScheme([ColorGroup("G", "orange"), ColorGrou...`
	base_pairing = `ColorScheme([ColorGroup("TAU", "darkorange", "W...`
	hydrophobicity = `ColorScheme([ColorGroup("RKDENQ", "black", "h...`
	chemistry = `ColorScheme([ColorGroup("GSTYC", "green", "polar")...`
	charge = `ColorScheme([ColorGroup("KRH", "blue", "Positive"), C...`
	taylor = `ColorScheme([ColorGroup('A', '#CCFF00'), ColorGroup('...`

Variables Details

nucleotide

Value:

ColorScheme([ColorGroup("G", "orange"), ColorGroup("TU", "red"), Color
Group("C", "blue"), ColorGroup("A", "green")])

base_pairing

Value:

ColorScheme([ColorGroup("TAU", "darkorange", "Weak (2 Watson-Crick hyd
rogen bonds)"), ColorGroup("GC", "blue", "Strong (3 Watson-Crick hydro
gen bonds)")],)

hydrophobicity

Value:

ColorScheme([ColorGroup("RKDENQ", "black", "hydrophilic"), ColorGroup(
"SGHTAP", "green", "neutral"), ColorGroup("YVMCLFIW", "blue", "hydroph
obic")], alphabet= seq.unambiguous_protein_alphabet)

chemistry

Value:

ColorScheme([ColorGroup("GSTYC", "green", "polar"), ColorGroup("NQ", "
purple", "neutral"), ColorGroup("KRH", "blue", "basic"), ColorGroup("D
E", "red", "acidic"), ColorGroup("PAWFLIMV", "black", "hydrophobic")],
 alphabet= seq.unambiguous_protein_alphabet)

charge

Value:

ColorScheme([ColorGroup("KRH", "blue", "Positive"), ColorGroup("DE", "
red", "Negative")], alphabet= seq.unambiguous_protein_alphabet)

taylor

Value:

ColorScheme([ColorGroup('A', '#CCFF00'), ColorGroup('C', '#FFFF00'), C
olorGroup('D', '#FF0000'), ColorGroup('E', '#FF0066'), ColorGroup('F',
 '#00FF66'), ColorGroup('G', '#FF9900'), ColorGroup('H', '#0066FF'), C
olorGroup('I', '#66FF00'), ColorGroup('K', '#6600FF'), ColorGroup('L',
 '#33FF00'), ColorGroup('M', '#00FF00'), ColorGroup('N', '#CC00FF'), C
olorGroup('P', '#FFCC00'), ColorGroup('Q', '#FF00CC'), ColorGroup('R',
 '#0000FF'), ColorGroup('S', '#FF3300'), ColorGroup('T', '#FF6600'), C
olorGroup('V', '#99FF00'), ColorGroup('W', '#00CCFF'), ColorGroup('Y',
...