Package weblogolib :: Class LogoData

Class LogoData

object --+
         |
        LogoData

The data needed to generate a sequence logo.
   
- alphabet 
- length
- counts  -- An array of character counts
- entropy -- The relative entropy of each column
- entropy_interval -- entropy confidence interval

Instance Methods

__init__(self, length=None, alphabet=None, counts=None, entropy=None, entropy_interval=None, weight=None)
Creates a new LogoData object

source code

__str__(self)
str(x)

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__

Class Methods

from_counts(cls, alphabet, counts, prior=None)
Build a LogoData object from counts.

source code

from_seqs(cls, seqs, prior=None)
Build a LogoData object from a SeqList, a list of sequences.

source code

Properties
Inherited from `object`: `__class__`

Method Details

init(self, length=None, alphabet=None, counts=None, entropy=None, entropy_interval=None, weight=None)
(Constructor)

source code

Creates a new LogoData object

Overrides: object.__init__

str(self)
(Informal representation operator)

source code

str(x)

Overrides: object.__str__: (inherited documentation)

Class LogoData

__init__(self, length=None, alphabet=None, counts=None, entropy=None, entropy_interval=None, weight=None) (Constructor)

__str__(self) (Informal representation operator)

init(self, length=None, alphabet=None, counts=None, entropy=None, entropy_interval=None, weight=None)
(Constructor)

str(self)
(Informal representation operator)