SIMULATOR for DNA and protein datasets with insertions/deletions

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Center for Integrative Bioinformatics Vienna
Max F. Perutz Laboratories
Dr. Bohr Gasse 9
A-1030 Vienna, Austria

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	Max F. Perutz Laboratories
	University of Vienna
	Medical University, Vienna

	Deep Metazoan Phylogeny
	MaBS group
	evolVienna
	Max Perutz Library

SIMULATOR: Simulates DNA and protein datasets with well-defined insertion-deletion dynamics.

Introduction:

The program SIMULATOR is a software tool which generates data sets of related sequences for a given phylogeny and a given evolutionary model. Unlike currently available simulation programs, SIMULATOR does not only offer a wide variety of nucleotide or amino acid substitution models but also a well-defined insertion-deletion dynamics.

Reference:

If you use the program please cite

Roland Fleißner (2004) Sequence alignment and phylogenetic inference. Logos Verlag, Berlin.

Download:

simulator_src_1.0.tgz (SIMULATOR source code)
simulator_linux_1.0.tgz (new statically linked Linux executable version)

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