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Tanja Gesell
Research Interests:
- WHAT IS A STRUCTURE?
- WHAT CAN BE VISUALIZED?
- Project: Modeling the Dynamics of Sequence Evolution under Constraints.
- Key-Words: Structure Evolution - Complex Sequence Evolution Models - Comparative Genomic Screens of ncRNAs -
A Phylogenetic Definition of Structure - Lineage Specific Neighbourhood Systems - Phylogenetic Methods.
Short Vita:
Degrees:
- 2009 Dr.rer.nat (PhD)
Molecular Biology, University of Vienna, Austria. 30.10.2009
Thesis: A Phylogenetic Definition of Structure, University of Vienna, 2009.
International PhD student in Bioinformatics and Computational Biology at the Bioinformatics Integration Network II, Genome Research (GEN-AU), Austria.
- 2004 Diploma in Fine Art (M.Art)
with Minors: Philosophy (Aesthetics) and History of Art,
Kunstakademie Düsseldorf, Germany.
- 2003 Diploma in Biology (M.Sc.)
with Minors: Bioinformatics and Computer Science,
University of Düsseldorf, Germany.
Fellowships & Awards:
- 2011 GEN-AU Mobility Fellowship to work on Visualizations at Harvard University, Cambridge, Mass., US.
- 2010 FSIB Fellowship of the University of Vienna to cooperate with the University of Queensland, Australia.
- 2008 Participant of the Complex System Summer School 2008, Santa Fe Institute, US.
- 2004 EU Marie Curie Fellow at the European Bioinformatics Institute, Hinxton, Cambridge, UK.
- 2003 'Meisterschülerin' with Prof. R. Trockel, Kunstakademie Düsseldorf, Germany.
Publications / Conference Contributions
Paper
- 2010 S.E. Seemann, A.S. Richter, T. Gesell, R. Backofen, and J. Gorodkin,
PETcofold: Predicting conserved interactions and structures of two multiple alignments of RNA sequences.
Bioinformatics, accepted.
- 2010 C. Lorenz, T. Gesell, B. Zimmermann, U. Schoeberl, I. Bilusic, L. Rajkowitsch, C. Waldsich, A. von Haeseler and R. Schroeder,
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts.
Nucleic Acids Res., 38, 3794-3808.
(DOI: 10.1093/nar/gkq032,
PMID: 20348540)
- 2010 S. Washietl and T. Gesell,
Graph Representations and Algorithms in Computational Biology of RNA Secondary Structure.
In M. Dehmer (ed.) Structural Analysis of Complex Networks., 421-437, Birkhäuser, Boston, USA.
(ISBN: 978-0-8176-4788-9)
- 2010 B. Zimmermanne, T. Geselle, D. Chen, C. Lorenz and R. Schroeder,
Monitoring Genomic Sequences during SELEX Using High-Throughput Sequencing: Neutral SELEX.
PLoS ONE, 5, e9169.
(DOI: 10.1371/journal.pone.0009169,
PMID: 20161784)e contributed equally
- 2009 T. Gesell,
A Phylogenetic Definition of Structure.
PhD Thesis, University of Vienna.
- 2008 T. Gesell and S. Washietl,
Dinucleotide Controlled Null Models for Comparative RNA Gene Prediction.
BMC Bioinform., 9, 248.
(DOI: 10.1186/1471-2105-9-248,
PMID: 18505553)
- 2008 S. Klaere, T. Gesell, and A. von Haeseler,
The impact of single substitutions on multiple sequence alignments.
Phil. Trans. R. Soc. Lond. B, 363, 4041-4047.
(DOI: 10.1098/rstb.2008.0140,
PMID: 18852110)
- 2008 M. Dehmer, F. Emmert-Streib, and T. Gesell,
A comparative analysis of multidimensional features of objects resembling sets of graphs.
Appl. Math. Comput., 196, 221-235.
(DOI: 10.1016/j.amc.2007.05.058)
- 2006 T. Gesell and A. von Haeseler,
In silico sequence evolution with site-specific interactions along phylogenetic trees.
Bioinformatics, 22, 716-722.
(DOI: 10.1093/bioinformatics/bti812,
PMID: 16332711)
Addresses
Tanja Gesell
Center for Integrative Bioinformatics Vienna (CIBIV)
(CIBIV is a joint institute of Vienna University,
Medical University, and
University of Veterinary Medicine, Vienna, Austria)
Max F. Perutz Laboratories (MFPL)
Dr. Bohr Gasse 3 / 6.15
A-1030 Wien, Austria
Phone: ++43 +1 / 4277-24025
Fax: ++43 +1 / 4277-24098
Email: tanja.gesell(AT)univie.ac.at
Postal Address:
Center for Integrative Bioinformatics Vienna (CIBIV)
Max F. Perutz Laboratories (MFPL)
Dr. Bohr Gasse 9
A-1030 Wien, Austria
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