Ingo Ebersberger

Research Interests:

• DNA sequence evolution
• Comparative genomics in higher primates
• Phylogeny Reconstruction
• Deep Metazoan Phylogeny
• Evolution of protein function

Short Vita:

Education:

• 1988: Abitur, Nieder-Olm
• 1997: Diplom, Mainz
  Thesis: Intron-Evolution in der Zuckmücke Chironomus

Professional Experience:

• 1998-1999: Research associate at the LMU Munich, Department of Zoology
• 1999-2002: Research associate at the Max Planck Institute for Evolutionary Anthropolgy
• 2002-2003: PostDoc at the Bioinformatics Department, Düsseldorf University
• 2003-2006: Lecturer (C1) at the Heinrich Heine University Düsseldorf
• 2006-present: Research associate at the Center for Integrative Bioinformatics in Vienna

Degree:

• Dr. rer. nat. (2003), Leipzig
  Thesis: DNA sequence comparisons between humans and chimpanzees.

Publications

• T. Koestler, A. von Haeseler, and Ingo Ebersberger (2010) FACT: Functional annotation transfer between proteins with similar feature architecture. BMC Bioinformatics 11:417
• K. Meusemann, B.M. von Reumont, S. Simon, F. Roeding, S. Strauss, P. Kueck, I. Ebersberger, M. Walzl, G. Pass, S. Breuers, V. Achter, A. von Haeseler, T. Burmester, H. Hadrys, W.W. Waegele and B. Misof (2010) A phylogenomic approach to resolve the arthropod tree of life. Mol Biol Evol Advnaced online publication (PMID: 20534705; DOI: 10.1093/molbev/msq130)

• A. Wittek, H. Herlyn, I. Ebersberger, D. B. M. Welch, and T. Hankeln. Support fo r the Monophyletic Origin of Gnathifera from Phylogenomics. Mol Phylogenet Evol, 53, 1037-1041 (< A HREF="http://www.ncbi.nlm.nih.gov/pubmed/19654049">PMID: 19654049)
• I. Ebersberger, Sascha Strauss, and Arndt von Haeseler (2009) HaMStR: Profile Hidden Markov Model Based Search for Orthologs in ESTs. BMC Evol. Biol., 9(1):157 (PMID: 19586527)
• S. J. F. Cronin, N. T. Nehme, S. Limmer, S. Liegeois, J. A. Pospisilik, D. Schramek, A. Leibbrandt, R. de Matos Simoes, S. Gruber, U. Puc, I. Ebersberger, T. Zoranovic, G. G. Neely, A. von Haeseler, and D. Ferrandon and J. M. Penninger (2009) Genome-Wide RNAi Screen Identifies Genes Involved in Intestinal Pathogenic Bacterial Infection. Science, 325, 340-343 (PMID: 19520911)

• J. Shi, J. Franklin, J. Yelinek, I. Ebersberger, G. Warren, and C. Y. He (2008) Centrin4 coordinates cell and nuclear division in Trypanosoma brucei. J. Cell Science 121, 3062-3070. (DOI: 0.1242/jcs.030643)
• G. Ewing, I. Ebersberger, H. A. Schmidt, and A. von Haeseler (2008) Rooted Triple Consensus and Anomalous Gene Trees. BMC Evol. Biol. 8, 118. (DOI: 0.1186/1471-2148-8-118)
• I. Barinaga-Rementiera Ramirez, C. L. de Graffenried, I Ebersberger, J. Yelinek, C. Y. He, A. Price, and G. Warren (2008) TbG63, a golgin involved in Golgi architecture in Trypanosoma brucei. J. Cell Science , 121, 1538-1546. (DOI: 10.1242/jcs.014324, PMID: 18411253)

• I. Ebersberger, P. Galgoczy, S. Taudien, S. Taenzer, M. Platzer, and A. von Haeseler (2007) Mapping human genetic ancstry. Mol. Biol. Evol. 24(9): 1-10. ( DOI: 10.1093/molbev/msm156, PMID: 17660505)
• I. Ebersberger, A. von Haeseler, and H.A. Schmidt (2007) Phylogeny Reconstruction. In T. Lengauer (ed.) Bioinformatics: From Genomes to Therapies 83-128, Wiley-VCH, Weinheim. (ISBN 978-3-527-31278-8)
• J. A. Pospisilik, C. Knauf, C. Joza, P. Benit, M. Orthofer, P. D. Cani, I. Ebersberger, T. Nakashima, R. Sarao, M. Rangacher, G. Neely, C. R. Kahn, G. Kroemer, P. Rustin, R. Bureclin, and J. M. Penninger (2007) Targeted deletion of AIF increases mitochondrial oxidative phosphorylation and protects from obesity and diabetes. Cell, 131, 476-491. (DOI: 10.1016/j.cell.2007.08.047, PMID: 17981116)
• F. Roeding, S. Hagner-Holler, H. Ruhberg, I. Ebersberger, A. von Haeseler, M. Kube, R. Reinhardt, and Burmester, T. (2007) EST sequencing of Onychophora and phylogenomic analysis of Metazoa. Mol. Phylogenet. Evol., 45, 942-951. (DOI: 10.1016/j.ympev.2007.09.002, PMID: 17933557)

• J. Krause, P. H. Dear, J. L. Pollack, M. Slatkin, H. Spriggs, I. Barnes, A. Lister, I. Ebersberger, S. Pääbo and M. Hofreiter (2006) Multiplex amplification of the mammoth mitochondrial genome and the evolution of elephantidae. Nature 439: 724-727. Epub 2005 Dec 18 ( DOI: 10.1038/nature04432)
• S. Taudien, I. Ebersberger, Gernot Glöckner and Mattias Platzer (2006) Should the draft become a final drawing? Trends in Genet. 22(3):122-5. Epub 2006 Jan 10. (DOI: 10.1016/j.tig.2005.12.007)

• I. Ebersberger and M. Meyer (2005) A genomic region evolving toward different GC contents in humans and chimpanzees indicates a recent and regionally limited shift in the mutation pattern. Mol Biol Evol. 22, 1240-1245 (DOI: 10.1093/molbev/msi109)
• I. Ebersberger, J. Knobloch, and W. Kunz. (2005) Cracks in the shell: zooming in on eggshell formation in the human parasite Schistosoma mansoni. Dev. Genes Evol. 215: 261-267 (DOI: 10.1007/s00427-005-0467-z)

• I. Ebersberger (2004) Chimpanzee Genome. In R.A. Meyers (ed.) Encyclopedia of Molecular Cell Biology and Molecular Medicine, 2nd Edition, Volume 2, 551-678, Wiley-VCH, Weinheim, Germany. (ISBN: 3-527-30544-0)

• I. Hellmann, I. Ebersberger, S. E. Ptak, S. Pääbo, and M. Przeworski (2003) A neutral explanation for the correlation of diversity with recombination rates in humans. Am. J. Hum. Genet. 72, 1527-1535.
• I. Hellmann, S. Zöllner, W. Enard, I. Ebersberger, B. Nickel, and S. Pääbo (2003) Selection on human genes as revealed by comparisons to chimpanzee cDNA. Genome Res. 13, 831-837.

• I. Ebersberger, C. Schwarz, D. Metzler, and S. Pääbo (2002) Genome wide DNA sequence comparison between humans and chimpanzees. Am. J. Hum. Genet. 70, 1490-1497.

• T. Hankeln, H. Friedl, I. Ebersberger, J. Martin, and E. R. Schmidt (1997) A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain. Gene 205, 151-160.

Lehre

Projekte

Tools

Address:

Ingo Ebersberger - Last Change: 09.Aug.2010 .