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Max F. Perutz Laboratories
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A-1030 Vienna, Austria
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Anne Kupczok

Anne Kupczok


Research Interests

  • Supertrees
  • Distances between phylogenetic trees
  • Phylogenetic congruence
  • ...

Short Vita

Degree:

  • 2010: 'Ph.D.' in Molecular Biology (Dr. rer. nat.), University of Vienna
    Thesis: Postprocessing Phylogenies: Tree Distances and Supertrees
  • 2006: 'Diplom Bioinformatikerin', Friedrich-Schiller University Jena
    Thesis: Evolutionary genomics of the plant pathogenic bacteria Xanthomonas

Professional Experience:


Publications


Talks

  • Consequences of different null models on the tree shape bias of supertree methods.
    PhyloGroup 9, Hinxton, UK, 11.12.2009. (Programme pdf)
  • Accuracy of phylogeny reconstruction methods combining overlapping gene data sets.
    Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2009), Iowa City, USA, 3.6.-7.6.2009. (Abstract)
  • Comparison of commonly used methods for combining multiple phylogenetic data sets.
    Mathematics and Informatics in Evolution and Phylogeny, Hameau de l'Etoile, France, 10.6.-12.6.2008. (Slides)
  • An exact algorithm for computing the geodesic distance between phylogenetic trees.
    Phylogenetics (PLG), Future Directions in Phylogenetic Methods and Models, Isaac Newton Institute for Mathematical Sciences, Cambridge, UK, 17.12-21.12.2007. (Slides and video)

Poster

  • Consequences of different null models on the tree shape bias of supertree methods.
    Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2010), Lyon, France, 4.7.-8.7.2010. (Programme)
  • Genome-wide identification of positively selected genes in plant-pathogenic bacteria.
    Otto Warburg International Summer School and Workshop 2006 on Evolutionary Genomics, Berlin, Germany, 29.8.-8.9.2006. (Programme)

Software

  • GeoMeTree: Geodesic Metric on Trees
  • mrc.py: Matrix Representation with Compatibility

Addresses

Anne Kupczok

Center for Integrative Bioinformatics Vienna (CIBIV)
(CIBIV is a joint institute of Vienna University, and Medical University, Vienna, Austria)
Max F. Perutz Laboratories (MFPL)
Vienna Biocenter 5 / 1812.3
A-1030 Wien, Austria
Phone: +43 1 / 4277 24027
Fax: +43 1 / 4277 24098
Email: anne.kupczok(AT)univie.ac.at

Postal Address:

Center for Integrative Bioinformatics Vienna (CIBIV)
Max F. Perutz Laboratories (MFPL)
Doktor Bohr Gasse 9
A-1030 Wien, Austria



Anne Kupczok - Last Change: 17.Jan.2013 .