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Anne Kupczok
Research Interests
- Supertrees
- Distances between phylogenetic trees
- Phylogenetic congruence
- ...
Short Vita
Degree:
- 2010: 'Ph.D.' in Molecular Biology (Dr. rer. nat.), University of Vienna
Thesis: Postprocessing Phylogenies: Tree Distances and Supertrees
- 2006: 'Diplom Bioinformatikerin', Friedrich-Schiller University Jena
Thesis: Evolutionary genomics of the plant pathogenic bacteria Xanthomonas
Professional Experience:
Publications
- A. Kupczok and A. von Haeseler (2009)
Comment on: A congruency index for testing topological similarity between trees.
Bioinformatics, 25, 147-149.
(DOI: 10.1093/bioinformatics/btn539,
PMID: 18922807)
- A. Kupczok, A. von Haeseler, and S. Klaere (2008)
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
J. Comput. Biol., 15, 577-591.
(DOI: 10.1089/cmb.2008.0068,
PMID: 18631022)
- A. Kupczok and P. Dittrich (2006)
Determinants of Simulated RNA Evolution.
J. Theor. Biol., 238, 726-735
(DOI: 10.1016/j.jtbi.2005.06.019,
PMID: 16098538)
Talks
- Consequences of different null models on the tree shape bias of supertree methods.
PhyloGroup 9, Hinxton, UK, 11.12.2009. (Programme pdf)
- Accuracy of phylogeny reconstruction methods combining overlapping gene data sets.
Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2009), Iowa City, USA, 3.6.-7.6.2009. (Abstract)
- Comparison of commonly used methods for combining multiple phylogenetic data sets.
Mathematics and Informatics in Evolution and Phylogeny, Hameau de l'Etoile, France, 10.6.-12.6.2008. (Slides)
- An exact algorithm for computing the geodesic distance between phylogenetic trees.
Phylogenetics (PLG),
Future Directions in Phylogenetic Methods and Models, Isaac Newton Institute for Mathematical Sciences, Cambridge, UK,
17.12-21.12.2007. (Slides and video)
Poster
- Consequences of different null models on the tree shape bias of supertree methods.
Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2010), Lyon, France, 4.7.-8.7.2010. (Programme)
- Genome-wide identification of positively selected genes in plant-pathogenic bacteria.
Otto Warburg International Summer School and Workshop 2006 on Evolutionary Genomics, Berlin, Germany, 29.8.-8.9.2006. (Programme)
Software
- GeoMeTree: Geodesic Metric on Trees
- mrc.py: Matrix Representation with Compatibility
Addresses
Anne Kupczok
Center for Integrative Bioinformatics Vienna (CIBIV)
(CIBIV is a joint institute of Vienna University, and
Medical University, Vienna, Austria)
Max F. Perutz Laboratories (MFPL)
Vienna Biocenter 5 / 1812.3
A-1030 Wien, Austria
Phone: +43 1 / 4277 24027
Fax: +43 1 / 4277 24098
Email: anne.kupczok(AT)univie.ac.at
Postal Address:
Center for Integrative Bioinformatics Vienna (CIBIV)
Max F. Perutz Laboratories (MFPL)
Doktor Bohr Gasse 9
A-1030 Wien, Austria
Anne Kupczok - Last Change:
17.Jan.2013
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