Center for Integrative Bioinformatics Vienna (CIBIV)
Max Perutz Labs
Dr. Bohr Gasse 9
A-1030 Wien, Austria
Phylogenetics and Molecular Evolution
Algorithms and Software development
Oct 2011 - Dec 2015: Ph.D. in Bioinformatics, Vienna Graduate School in Computational Science, University of Vienna, Austria
Sep 2009 - Jul 2011: M.Sc. in Mathematical Engineering, University of L’Aquila (Italy) / University of Nice - Sophia Antipolis (France)
Sep 2008 - Jun 2009: M.Sc. in Mathematics, Oles Honchar Dnipropetrovsk National University, Ukraine
Sep 2004 - Jun 2008: B.Sc. in Mathematics and basics of Economics, Oles Honchar Dnipropetrovsk National University, Ukraine
May 2016 - present: Postdoctoral researcher, Center for Integrative Bioinformatics Vienna, University of Vienna, Austria.
SS2020 , SS2021: Tutor, Bioinformatik für Biologen, University of Vienna, Austria
Aug 2017 - Jun 2018: Maternity leave
WS 2012, WS 2013: Tutor, Introduction to bioinformatics, University of Vienna, Austria
Oct 2011 - Apr 2016: Scientific Assistant, Center for Integrative Bioinformatics Vienna (CIBIV), University of Vienna, Austria
Oct 2011 - Feb 2015: Scientific Assistant, Max F. Perutz Laboratories (MFPL), Austria
Apr 2011 - Jul 2011: Collaboration with the group of Computational Biophysics, Biochemistry and Chemistry (CBBC), La Sapienza-University of Rome, Italy
Talks and Posters
The Twelfth Theoretical Phylogenetics Meeting at UTAS, Hobart, TASMANIA, November 25-27, 2020
Talk: “Generating and sampling trees from a phylogenetic terrace”
The Tenth UTAS (mainly) Theoretical Phylogenetics Meeting, Hobart, TASMANIA, November 21-23, 2018.
Talk: “Characteristics of phylogenetic terraces and their influence on tree space exploration”
The 21st Annual New Zealand Phylogenomics Meeting 2017, Auckland, Waiheke, New Zealand, February 12-17, 2017.
Talk: “Discussion on “small n, large p“ in phylogenetics and application of James-Stein estimator”
MCEB 2016 - Mathematical and computational evolutionary biology, Montpellier, France, June 12-16, 2016.
Talk: “Phylogenomics: Efficient analysis by accounting for phylogenetic terraces”
MASAMB 2016 - Mathematical and Statistical aspects of Molecular Biology, Cambridge, UK, October 3-4, 2016.
Talk: “Phylogenetic terraces and efficient phylogenetic inference”
RECOMB - 18th Annual International Conference on Research in Computational Molecular Biology, Pittsburgh, Pennsylvania, USA, April 2-5, 2014.
Poster: “Terrace aware phylogenomic inference”
MCEB - Mathematical and computational evolutionary biology, Montpellier, France, June 15-19, 2014.
Poster: “Viable taxon selection under Split Diversity”
MAMOW – Mathematical Modelling Workshop: MathMods & Ema Alumni Meeting, L’Aquila, Italy, July 14-19, 2014.
Talk: “Modelling Evolutionary Relationships: problems and challenges in Phylogenetics and its Applications”
4th annual MFPL PhD and PostDoc Retreat, Sopron, Hungary, September 27-28, 2012.
Poster: “Biodiversity and Conservation Planning: Phylogenetic Diversity under Food Web constraints”
O. Chernomore, L. Peterse, J. Schneidewinde, A. Loeschcke, E. Knieps-Grünhagen, F. Schmitz, E. von Lieres, R.J. Kutta, V. Svensson, K.-E. Jaeger, T. Drepper, A. von Haeseler, and U. Krauss
(2021) Complex evolution of light-dependent protochlorophyllide oxidoreductases in aerobic anoxygenic phototrophs: origin, phylogeny and function. Mol. Biol. Evol., 38, 819-837. (DOI: 10.1093/molbev/msaa234,
e contributed equally
B.Q. Minh, H.A. Schmidt, O. Chernomor, D. Schrempf, M.D. Woodhams, A. von Haeselers, and R. Lanfears
(2020) IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Mol. Biol. Evol., 37, 1530-1534. (free reprint,
s co-senior authors.
P. Breitling, A. Stamatakis, O. Chernomor, B. Bettisworth, and L. Reszczynski
(2019) Empirical Analysis of Phylogenetic Quasi-Terraces bioRxiv, 810309. (DOI: 10.1101/810309)
O. Chernomor, B.Q. Minhc, F. Forest, S. Klaere, T. Ingram, M. Henzinger, and A. von Haeseler
(2015) Split Diversity in Constrained Conservation Prioritization using Integer Linear Programming. Methods Ecol. Evol., 6, 83-91. (DOI: 10.1111/2041-210X.12299),
c corresponding author
O. Chernomor, B.Q. Minh, and A. von Haeseler
(2015) Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference. J. Comput. Biol., 22, 1129-1142. (DOI: 10.1089/cmb.2015.0146,
E. Coccia, O. Chernomor, M. Barborini, S. Sorella, and L. Guidoni
(2012) Molecular Electrical Properties from Quantum Monte Carlo Calculations: Application to Ethyne. Journal of Chemical Theory and Computation, 8(6), pp 1952-1962 (DOI:10.1111/2041-210X.12299)