- Which of these two alignment is more useful for phylogenetic analysis?
- test46-1701.phy
- test64-384.phy
- Try to find out whether sequence 1 (SouthCarolina1918) clusters with
human (h*), swine (s*), or avian (a*) viruses.
flu-a-1000.phy
- Try different evolutionary models (with and without heterogeneity) and
find out which gives the highest likelihood.
PTLVtax.phy