Corrina's corrected Muscle-Alignment: -rw-r--r-- 1 hs users 1947 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy -rw-r--r-- 1 hs users 448 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy.iqpnni.tree -rw-r--r-- 1 hs users 6105 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 467 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy.QP.tree -rw-r--r-- 1 hs users 6833 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 466 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy.SQP.tree -rw-r--r-- 1 hs users 6780 2005-11-09 09:54 dkk-aa-muscle-cys2-16_korr.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2189 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy -rw-r--r-- 1 hs users 508 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy.iqpnni.tree -rw-r--r-- 1 hs users 6417 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 526 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy.QP.tree -rw-r--r-- 1 hs users 7018 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 528 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy.SQP.tree -rw-r--r-- 1 hs users 7144 2005-11-09 09:54 dkk-aa-muscle-cys2-18_korr.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 3531 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy -rw-r--r-- 1 hs users 631 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy.iqpnni.tree -rw-r--r-- 1 hs users 6775 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 624 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy.QP.tree -rw-r--r-- 1 hs users 7475 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 638 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy.SQP.tree -rw-r--r-- 1 hs users 7522 2005-11-09 09:54 dkk-aa-muscle-cys2-22_korr.phy.SQP.treetool.pdf Muscle-Alignment with latest additions: -rw-r--r-- 1 hs users 3143 2005-11-09 09:53 dkk+addons-muscle-27.phy -rw-r--r-- 1 hs users 803 2005-11-09 09:53 dkk+addons-muscle-27.phy.iqpnni.tree -rw-r--r-- 1 hs users 7349 2005-11-09 09:53 dkk+addons-muscle-27.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 759 2005-11-09 09:53 dkk+addons-muscle-27.phy.QP.tree -rw-r--r-- 1 hs users 7841 2005-11-09 09:53 dkk+addons-muscle-27.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 798 2005-11-09 09:53 dkk+addons-muscle-27.phy.SQP.tree -rw-r--r-- 1 hs users 7915 2005-11-09 09:53 dkk+addons-muscle-27.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 3259 2005-11-09 09:53 dkk+addons-muscle-28.phy -rw-r--r-- 1 hs users 834 2005-11-09 09:53 dkk+addons-muscle-28.phy.iqpnni.tree -rw-r--r-- 1 hs users 7385 2005-11-09 09:53 dkk+addons-muscle-28.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 778 2005-11-09 09:53 dkk+addons-muscle-28.phy.QP.tree -rw-r--r-- 1 hs users 7884 2005-11-09 09:53 dkk+addons-muscle-28.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 817 2005-11-09 09:53 dkk+addons-muscle-28.phy.SQP.tree -rw-r--r-- 1 hs users 7951 2005-11-09 09:53 dkk+addons-muscle-28.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 3375 2005-11-09 09:53 dkk+addons-muscle-29.phy -rw-r--r-- 1 hs users 864 2005-11-09 09:53 dkk+addons-muscle-29.phy.iqpnni.tree -rw-r--r-- 1 hs users 7633 2005-11-09 09:53 dkk+addons-muscle-29.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 760 2005-11-09 09:53 dkk+addons-muscle-29.phy.QP.tree -rw-r--r-- 1 hs users 7952 2005-11-09 09:53 dkk+addons-muscle-29.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 835 2005-11-09 09:53 dkk+addons-muscle-29.phy.SQP.tree -rw-r--r-- 1 hs users 8152 2005-11-09 09:53 dkk+addons-muscle-29.phy.SQP.treetool.pdf Muscle-Alignment with latest additions, but last abiguous block discarded: -rw-r--r-- 1 hs users 2574 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy -rw-r--r-- 1 hs users 803 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy.iqpnni.tree -rw-r--r-- 1 hs users 7300 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 723 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy.QP.tree -rw-r--r-- 1 hs users 7763 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 822 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy.SQP.tree -rw-r--r-- 1 hs users 7961 2005-11-09 09:53 dkk+addons-muscle-27-redA.phy.SQP.treetool.pdf Sunday-Alignments (Heiko's Version) -rw-r--r-- 1 hs users 2424 2005-11-09 09:53 dkk-sunday-has-19.phy -rw-r--r-- 1 hs users 555 2005-11-09 09:53 dkk-sunday-has-19.phy.iqpnni.tree -rw-r--r-- 1 hs users 6465 2005-11-09 09:53 dkk-sunday-has-19.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 561 2005-11-09 09:53 dkk-sunday-has-19.phy.QP.tree -rw-r--r-- 1 hs users 7141 2005-11-09 09:53 dkk-sunday-has-19.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 562 2005-11-09 09:53 dkk-sunday-has-19.phy.SQP.tree -rw-r--r-- 1 hs users 7112 2005-11-09 09:53 dkk-sunday-has-19.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2678 2005-11-09 09:53 dkk-sunday-has-21.phy -rw-r--r-- 1 hs users 617 2005-11-09 09:53 dkk-sunday-has-21.phy.iqpnni.tree -rw-r--r-- 1 hs users 6729 2005-11-09 09:53 dkk-sunday-has-21.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 634 2005-11-09 09:53 dkk-sunday-has-21.phy.QP.tree -rw-r--r-- 1 hs users 7468 2005-11-09 09:53 dkk-sunday-has-21.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 636 2005-11-09 09:53 dkk-sunday-has-21.phy.SQP.tree -rw-r--r-- 1 hs users 7485 2005-11-09 09:53 dkk-sunday-has-21.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2932 2005-11-09 09:53 dkk-sunday-has-23.phy -rw-r--r-- 1 hs users 679 2005-11-09 09:53 dkk-sunday-has-23.phy.iqpnni.tree -rw-r--r-- 1 hs users 6914 2005-11-09 09:53 dkk-sunday-has-23.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 660 2005-11-09 09:53 dkk-sunday-has-23.phy.QP.tree -rw-r--r-- 1 hs users 7490 2005-11-09 09:53 dkk-sunday-has-23.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 650 2005-11-09 09:53 dkk-sunday-has-23.phy.SQP.tree -rw-r--r-- 1 hs users 7468 2005-11-09 09:53 dkk-sunday-has-23.phy.SQP.treetool.pdf Sunday-Alignments (Thomas' Version) -rw-r--r-- 1 hs users 2405 2005-11-09 09:53 dkk-sunday_TWH-19.phy -rw-r--r-- 1 hs users 555 2005-11-09 09:53 dkk-sunday_TWH-19.phy.iqpnni.tree -rw-r--r-- 1 hs users 6455 2005-11-09 09:53 dkk-sunday_TWH-19.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 535 2005-11-09 09:53 dkk-sunday_TWH-19.phy.QP.tree -rw-r--r-- 1 hs users 7095 2005-11-09 09:53 dkk-sunday_TWH-19.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 562 2005-11-09 09:53 dkk-sunday_TWH-19.phy.SQP.tree -rw-r--r-- 1 hs users 7166 2005-11-09 09:53 dkk-sunday_TWH-19.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2657 2005-11-09 09:53 dkk-sunday_TWH-21.phy -rw-r--r-- 1 hs users 617 2005-11-09 09:53 dkk-sunday_TWH-21.phy.iqpnni.tree -rw-r--r-- 1 hs users 6850 2005-11-09 09:53 dkk-sunday_TWH-21.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 622 2005-11-09 09:53 dkk-sunday_TWH-21.phy.QP.tree -rw-r--r-- 1 hs users 7420 2005-11-09 09:53 dkk-sunday_TWH-21.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 611 2005-11-09 09:53 dkk-sunday_TWH-21.phy.SQP.tree -rw-r--r-- 1 hs users 7423 2005-11-09 09:53 dkk-sunday_TWH-21.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2909 2005-11-09 09:53 dkk-sunday_TWH-23.phy -rw-r--r-- 1 hs users 679 2005-11-09 09:53 dkk-sunday_TWH-23.phy.iqpnni.tree -rw-r--r-- 1 hs users 6924 2005-11-09 09:53 dkk-sunday_TWH-23.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 660 2005-11-09 09:53 dkk-sunday_TWH-23.phy.QP.tree -rw-r--r-- 1 hs users 7505 2005-11-09 09:53 dkk-sunday_TWH-23.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 649 2005-11-09 09:53 dkk-sunday_TWH-23.phy.SQP.tree -rw-r--r-- 1 hs users 7360 2005-11-09 09:53 dkk-sunday_TWH-23.phy.SQP.treetool.pdf Thomas' T-Coffee based Alignments -rw-r--r-- 1 hs users 2063 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy -rw-r--r-- 1 hs users 524 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy.iqpnni.tree -rw-r--r-- 1 hs users 6425 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 542 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy.QP.tree -rw-r--r-- 1 hs users 6977 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 542 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy.SQP.tree -rw-r--r-- 1 hs users 6991 2005-11-10 09:40 VarA-tcfMA68378_25547.finalB_clustalw.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2351 2005-11-10 09:40 VarB-tcfMA44295_18941.phy -rw-r--r-- 1 hs users 586 2005-11-10 09:40 VarB-tcfMA44295_18941.phy.iqpnni.tree -rw-r--r-- 1 hs users 6853 2005-11-10 09:40 VarB-tcfMA44295_18941.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 603 2005-11-10 09:40 VarB-tcfMA44295_18941.phy.QP.tree -rw-r--r-- 1 hs users 7433 2005-11-10 09:40 VarB-tcfMA44295_18941.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 580 2005-11-10 09:40 VarB-tcfMA44295_18941.phy.SQP.tree -rw-r--r-- 1 hs users 7380 2005-11-10 09:40 VarB-tcfMA44295_18941.phy.SQP.treetool.pdf -rw-r--r-- 1 hs users 2063 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy -rw-r--r-- 1 hs users 524 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy.iqpnni.tree -rw-r--r-- 1 hs users 6277 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 542 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy.QP.tree -rw-r--r-- 1 hs users 6978 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 542 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy.SQP.tree -rw-r--r-- 1 hs users 7008 2005-11-10 09:40 VarC-tcfMA68378_25547.finalB_clustalw.phy.SQP.treetool.pdf Variant C + Ciona,Danio2,Dicty -rw-r--r-- 1 hs users 2468 2005-11-10 09:40 VarD-tcfMA68378_25547.finalB_clustalw+addon.phy -rw-r--r-- 1 hs users 608 2005-11-10 09:40 VarD-tcfMA68378_25547.finalB_clustalw+addon.phy.QP.tree -rw-r--r-- 1 hs users 7231 2005-11-10 09:40 VarD-tcfMA68378_25547.finalB_clustalw+addon.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 622 2005-11-10 09:40 VarD-tcfMA68378_25547.finalB_clustalw+addon.phy.SQP.tree -rw-r--r-- 1 hs users 7175 2005-11-10 09:40 VarD-tcfMA68378_25547.finalB_clustalw+addon.phy.SQP.treetool.pdf Variante D, aber ohne Dicty+Amphi -rw-r--r-- 1 hs users 2234 2005-11-10 15:41 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy -rw-r--r-- 1 hs users 554 2005-11-10 17:07 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy.iqpnni.tree -rw-r--r-- 1 hs users 6457 2005-11-10 17:07 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 572 2005-11-10 17:07 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy.QP.tree -rw-r--r-- 1 hs users 7010 2005-11-10 17:07 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 573 2005-11-10 17:07 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy.SQP.tree -rw-r--r-- 1 hs users 7010 2005-11-10 17:07 VarE-tcfMA68378_25547.finalB_clustalw+addon2.phy.SQP.treetool.pdf Ohne Colipasen und ohne Danio-Dkk3 -rw-r--r-- 1 hs users 1883 2005-11-10 19:00 VarF-nocol-nodanio3.phy -rw-r--r-- 1 hs users 463 2005-11-10 19:00 VarF-nocol-nodanio3.phy.iqpnni.tree -rw-r--r-- 1 hs users 6264 2005-11-10 19:00 VarF-nocol-nodanio3.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 481 2005-11-10 19:04 VarF-nocol-nodanio3.phy.QP.tree -rw-r--r-- 1 hs users 6789 2005-11-10 19:04 VarF-nocol-nodanio3.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 481 2005-11-10 19:02 VarF-nocol-nodanio3.phy.SQP.tree -rw-r--r-- 1 hs users 6792 2005-11-10 19:02 VarF-nocol-nodanio3.phy.SQP.treetool.pdf Only Danio3 removed -rw-r--r-- 1 hs users 2117 2005-11-11 17:41 VarG-nodanio3.phy -rw-r--r-- 1 hs users 523 2005-11-11 17:41 VarG-nodanio3.phy.iqpnni.tree -rw-r--r-- 1 hs users 6403 2005-11-11 17:41 VarG-nodanio3.phy.iqpnni.treetool.pdf -rw-r--r-- 1 hs users 541 2005-11-11 17:41 VarG-nodanio3.phy.QP.tree -rw-r--r-- 1 hs users 6949 2005-11-11 17:41 VarG-nodanio3.phy.QP.treetool.pdf -rw-r--r-- 1 hs users 542 2005-11-11 17:41 VarG-nodanio3.phy.SQP.tree -rw-r--r-- 1 hs users 6969 2005-11-11 17:41 VarG-nodanio3.phy.SQP.treetool.pdf